The Glovers will host Cod Army the week commencing January 22nd.
Darren Way’s side made it through to the last eight by seeing off league rivals Forest Green Rovers 2-0 at Huish Park courtesy of goals from Nathan Smith and Connor Smith.
The Green and Whites are yet to lose in the competition and will look to make it a hat-trick of wins against Sky Bet League One opposition in the Trophy when Fleetwood head south.
Ticket information will follow in due course.